from moonstone.parsers.base import BaseParser
[docs]class Picrust2PathwaysParser(BaseParser):
"""
Predicted sample pathway abundances output file from `Picrust2 <https://github.com/picrust/picrust2/wiki/>`_.
Format is the following:
+-----------+----------+----------+
| pathways | sample_1 | sample_2 |
+===========+==========+==========+
| pathway_1 | 14.3 | 123.4 |
+-----------+----------+----------+
| pathway_2 | 94.1 | 1232.1 |
+-----------+----------+----------+
"""
[docs] def __init__(self, *args, **kwargs):
parsing_options = {
'index_col': 0
}
super().__init__(*args, **kwargs, parsing_options=parsing_options)