moonstone.analysis.differential_analysis.DifferentialAnalysis¶

class moonstone.analysis.differential_analysis.DifferentialAnalysis(metadata_dataframe, read_count_dataframe)[source]¶

Perform differential analysis using chosen method.

__init__(metadata_dataframe, read_count_dataframe)[source]¶: Initialize self. See help(type(self)) for accurate signature.

Methods

`__init__`(metadata_dataframe, …)	Initialize self.
`corrected_p_values`(p_value_serie, …)	Some available methods are: - ‘bonferroni’ : one-step correction - ‘fdr_bh’ : Benjamini/Hochberg (non-negative)
`differential_analysis_by_feature`(features, …)	Features should be provided in a list splited by dichotomic or multiple option features.
`test_default`(args, *kwargs)
`test_dichotomic_features`(feature, test_to_use)
`test_multiple_features`(feature, test_to_use)

Attributes